Detailed information of SNP:
|
SNP ID:
sf0513877729(Gbrowse)
Chromosome: chr05 Position: 13877729 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1382 | 92.91% | 7.09% |
| All Indica | 795 | 98.99% | 1.01% |
| All Japonica | 465 | 80.86% | 19.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 98.11% | 1.89% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 310 | 75.81% | 24.19% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 78.12% | 21.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513877729 | C->T | INTERGENIC | None |