Detailed information of SNP:
|
SNP ID:
sf0513894192(Gbrowse)
Chromosome: chr05 Position: 13894192 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 72.25% | 27.75% |
| All Indica | 793 | 88.40% | 11.60% |
| All Japonica | 495 | 41.62% | 58.38% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 372 | 85.75% | 14.25% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 335 | 23.58% | 76.42% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513894192 | T->C | LOC_Os05g24170(LOC_Os05g24170.1) | INTRON |