Detailed information of SNP:
|
SNP ID:
sf0513911670(Gbrowse)
Chromosome: chr05 Position: 13911670 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 60.68% | 39.32% |
| All Indica | 794 | 60.71% | 39.29% |
| All Japonica | 494 | 59.31% | 40.69% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 374 | 46.52% | 53.48% |
| Indica II | 210 | 71.43% | 28.57% |
| Indica Intermediate | 210 | 75.24% | 24.76% |
| Temperate Japonica | 334 | 76.65% | 23.35% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513911670 | G->T | INTERGENIC | None |