Detailed information of SNP:
|
SNP ID:
sf0513953560(Gbrowse)
Chromosome: chr05 Position: 13953560 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1388 | 93.23% | 6.77% |
| All Indica | 779 | 92.94% | 7.06% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 59 | 38.98% | 61.02% |
| Indica I | 361 | 89.47% | 10.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 91.75% | 8.25% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513953560 | G->A | LOC_Os05g24220(LOC_Os05g24220.1) | Non-Synonymous SNP |