Detailed information of SNP:
|
SNP ID:
sf0513955828(Gbrowse)
Chromosome: chr05 Position: 13955828 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 91.73% | 8.27% |
| All Indica | 785 | 92.23% | 7.77% |
| All Japonica | 495 | 99.60% | 0.40% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 364 | 88.19% | 11.81% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 91.83% | 8.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513955828 | G->A | LOC_Os05g24230(LOC_Os05g24230.1) | INTRON |