Detailed information of SNP:
|
SNP ID:
sf0513966988(Gbrowse)
Chromosome: chr05 Position: 13966988 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 88.09% | 11.91% |
| All Indica | 799 | 87.36% | 12.64% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513966988 | G->T | LOC_Os05g24250(LOC_Os05g24250.1) | Non-Synonymous SNP |