Detailed information of SNP:
|
SNP ID:
sf0513976618(Gbrowse)
Chromosome: chr05 Position: 13976618 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 96.50% | 3.50% |
| All Indica | 788 | 93.78% | 6.22% |
| All Japonica | 492 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 91.60% | 8.40% |
| Indica II | 210 | 99.05% | 0.95% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 331 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0513976618 | G->A | INTERGENIC | None |