Detailed information of SNP:
|
SNP ID:
sf0514008949(Gbrowse)
Chromosome: chr05 Position: 14008949 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 95.46% | 4.54% |
| All Indica | 748 | 91.98% | 8.02% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 368 | 95.92% | 4.08% |
| Indica II | 184 | 85.87% | 14.13% |
| Indica Intermediate | 196 | 90.31% | 9.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514008949 | G->C | LOC_Os05g24310(LOC_Os05g24310.1) | Non-Synonymous SNP |