Detailed information of SNP:
|
SNP ID:
sf0514145689(Gbrowse)
Chromosome: chr05 Position: 14145689 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.03% | 43.97% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514145689 | G->A | LOC_Os05g24610(LOC_Os05g24610.1) | Synonymous |