Detailed information of SNP:
|
SNP ID:
sf0514170726(Gbrowse)
Chromosome: chr05 Position: 14170726 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1175 | 85.28% | 14.72% |
| All Indica | 559 | 71.02% | 28.98% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 265 | 63.77% | 36.23% |
| Indica II | 136 | 75.00% | 25.00% |
| Indica Intermediate | 158 | 79.75% | 20.25% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514170726 | C->T | INTERGENIC | None |