Detailed information of SNP:
|
SNP ID:
sf0514199561(Gbrowse)
Chromosome: chr05 Position: 14199561 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 62.78% | 37.22% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 495 | 4.04% | 95.96% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 1.20% | 98.80% |
| Tropical Japonica | 93 | 9.68% | 90.32% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514199561 | T->C | INTERGENIC | None |