Detailed information of SNP:
|
SNP ID:
sf0514213932(Gbrowse)
Chromosome: chr05 Position: 14213932 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1397 | 91.77% | 8.23% |
| All Indica | 794 | 88.92% | 11.08% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 52 | 61.54% | 38.46% |
| Indica I | 373 | 84.18% | 15.82% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 86.54% | 13.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514213932 | A->G | INTERGENIC | None |