Detailed information of SNP:
|
SNP ID:
sf0514264784(Gbrowse)
Chromosome: chr05 Position: 14264784 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 91.82% | 8.18% |
| All Indica | 798 | 93.23% | 6.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514264784 | T->C | LOC_Os05g24710(LOC_Os05g24710.1) | Non-Synonymous SNP |