Detailed information of SNP:
|
SNP ID:
sf0514271998(Gbrowse)
Chromosome: chr05 Position: 14271998 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 52.47% | 47.53% |
| All Indica | 798 | 89.35% | 10.65% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 42.50% | 57.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514271998 | C->T | INTERGENIC | None |