Detailed information of SNP:
|
SNP ID:
sf0514313298(Gbrowse)
Chromosome: chr05 Position: 14313298 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1356 | 87.17% | 12.83% |
| All Indica | 738 | 85.09% | 14.91% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 349 | 80.23% | 19.77% |
| Indica II | 190 | 97.37% | 2.63% |
| Indica Intermediate | 199 | 81.91% | 18.09% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514313298 | C->T | INTERGENIC | None |