Detailed information of SNP:
|
SNP ID:
sf0514339040(Gbrowse)
Chromosome: chr05 Position: 14339040 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 91.28% | 8.72% |
| All Indica | 791 | 92.67% | 7.33% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 208 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514339040 | G->A | INTERGENIC | None |