Detailed information of SNP:
|
SNP ID:
sf0514381783(Gbrowse)
Chromosome: chr05 Position: 14381783 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 50.32% | 49.68% |
| All Indica | 798 | 79.45% | 20.55% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 76.27% | 23.73% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514381783 | C->T | LOC_Os05g24950(LOC_Os05g24950.1) | Synonymous |