Detailed information of SNP:
|
SNP ID:
sf0514395701(Gbrowse)
Chromosome: chr05 Position: 14395701 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 95.09% | 4.91% |
| All Indica | 797 | 92.22% | 7.78% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 39 | 92.31% | 7.69% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514395701 | C->T | INTERGENIC | None |