Detailed information of SNP:
|
SNP ID:
sf0514395710(Gbrowse)
Chromosome: chr05 Position: 14395710 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 89.59% | 10.41% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 61 | 49.18% | 50.82% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514395710 | T->C | INTERGENIC | None |