Detailed information of SNP:
|
SNP ID:
sf0514462073(Gbrowse)
Chromosome: chr05 Position: 14462073 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 97.52% | 2.48% |
| All Indica | 794 | 95.84% | 4.16% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 211 | 86.73% | 13.27% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514462073 | C->T | LOC_Os05g25075(LOC_Os05g25075.1) | Non-Synonymous SNP |