Detailed information of SNP:
|
SNP ID:
sf0514477523(Gbrowse)
Chromosome: chr05 Position: 14477523 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 56.33% | 43.67% |
| All Indica | 793 | 89.79% | 10.21% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 372 | 87.37% | 12.63% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514477523 | A->G | INTERGENIC | None |