Detailed information of SNP:
|
SNP ID:
sf0514490636(Gbrowse)
Chromosome: chr05 Position: 14490636 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 94.87% | 5.13% |
| All Indica | 766 | 92.30% | 7.70% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 81.25% | 18.75% |
| Indica I | 369 | 95.12% | 4.88% |
| Indica II | 195 | 88.21% | 11.79% |
| Indica Intermediate | 202 | 91.09% | 8.91% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514490636 | C->T | LOC_Os05g25110(LOC_Os05g25110.1) | INTRON |