Detailed information of SNP:
|
SNP ID:
sf0514492304(Gbrowse)
Chromosome: chr05 Position: 14492304 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 91.74% | 8.26% |
| All Indica | 788 | 89.72% | 10.28% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 64 | 54.69% | 45.31% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 206 | 78.16% | 21.84% |
| Indica Intermediate | 208 | 86.06% | 13.94% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514492304 | C->T | INTERGENIC | None |