Detailed information of SNP:
|
SNP ID:
sf0514590947(Gbrowse)
Chromosome: chr05 Position: 14590947 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 52.58% | 47.42% |
| All Indica | 798 | 20.55% | 79.45% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 20.53% | 79.47% |
| Indica II | 212 | 21.70% | 78.30% |
| Indica Intermediate | 211 | 19.43% | 80.57% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514590947 | C->T | INTERGENIC | None |