Detailed information of SNP:
|
SNP ID:
sf0514591582(Gbrowse)
Chromosome: chr05 Position: 14591582 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 54.03% | 45.97% |
| All Indica | 797 | 83.94% | 16.06% |
| All Japonica | 496 | 4.44% | 95.56% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 375 | 86.67% | 13.33% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 334 | 4.49% | 95.51% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514591582 | T->C | INTERGENIC | None |