Detailed information of SNP:
|
SNP ID:
sf0514593059(Gbrowse)
Chromosome: chr05 Position: 14593059 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 52.75% | 47.25% |
| All Indica | 799 | 20.65% | 79.35% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 20.80% | 79.20% |
| Indica II | 213 | 22.54% | 77.46% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514593059 | A->G | INTERGENIC | None |