Detailed information of SNP:
|
SNP ID:
sf0514593453(Gbrowse)
Chromosome: chr05 Position: 14593453 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.78% | 49.22% |
| All Indica | 799 | 79.97% | 20.03% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 79.47% | 20.53% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514593453 | G->A | INTERGENIC | None |