Detailed information of SNP:
|
SNP ID:
sf0514609912(Gbrowse)
Chromosome: chr05 Position: 14609912 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 90.07% | 9.93% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 488 | 72.75% | 27.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 61.70% | 38.30% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514609912 | G->T | INTERGENIC | None |