Detailed information of SNP:
|
SNP ID:
sf0514612482(Gbrowse)
Chromosome: chr05 Position: 14612482 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 52.36% | 47.64% |
| All Indica | 799 | 83.10% | 16.90% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 84.27% | 15.73% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514612482 | T->C | INTERGENIC | None |