Detailed information of SNP:
|
SNP ID:
sf0514621287(Gbrowse)
Chromosome: chr05 Position: 14621287 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1314 | 80.90% | 19.10% |
| All Indica | 699 | 64.95% | 35.05% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 321 | 79.75% | 20.25% |
| Indica II | 188 | 57.98% | 42.02% |
| Indica Intermediate | 190 | 46.84% | 53.16% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514621287 | C->T | LOC_Os05g25290(LOC_Os05g25290.1) | Non-Synonymous SNP |