Detailed information of SNP:
|
SNP ID:
sf0514625489(Gbrowse)
Chromosome: chr05 Position: 14625489 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 50.60% | 49.40% |
| All Indica | 795 | 79.62% | 20.38% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 372 | 78.49% | 21.51% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514625489 | A->G | LOC_Os05g25300(LOC_Os05g25300.1) | Synonymous |