Detailed information of SNP:
|
SNP ID:
sf0514627154(Gbrowse)
Chromosome: chr05 Position: 14627154 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.10% | 46.90% |
| All Indica | 799 | 83.73% | 16.27% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514627154 | G->A | LOC_Os05g25300(LOC_Os05g25300.1) | Synonymous |