Detailed information of SNP:
|
SNP ID:
sf0514650573(Gbrowse)
Chromosome: chr05 Position: 14650573 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 51.38% | 48.62% |
| All Indica | 799 | 80.35% | 19.65% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 79.20% | 20.80% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514650573 | A->G | LOC_Os05g25330(LOC_Os05g25330.1) | INTRON |