Detailed information of SNP:
|
SNP ID:
sf0514654686(Gbrowse)
Chromosome: chr05 Position: 14654686 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 52.78% | 47.22% |
| All Indica | 799 | 83.35% | 16.65% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 84.80% | 15.20% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514654686 | A->G | INTERGENIC | None |