Detailed information of SNP:
|
SNP ID:
sf0514669743(Gbrowse)
Chromosome: chr05 Position: 14669743 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 50.95% | 49.05% |
| All Indica | 799 | 20.53% | 79.47% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 17.60% | 82.40% |
| Indica II | 213 | 26.76% | 73.24% |
| Indica Intermediate | 211 | 19.43% | 80.57% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514669743 | C->T | LOC_Os05g25370(LOC_Os05g25370.1) | INTRON |