Detailed information of SNP:
|
SNP ID:
sf0514669792(Gbrowse)
Chromosome: chr05 Position: 14669792 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 51.09% | 48.91% |
| All Indica | 799 | 20.28% | 79.72% |
| All Japonica | 497 | 95.57% | 4.43% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 17.33% | 82.67% |
| Indica II | 213 | 26.29% | 73.71% |
| Indica Intermediate | 211 | 19.43% | 80.57% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514669792 | G->A | LOC_Os05g25370(LOC_Os05g25370.1) | INTRON |