Detailed information of SNP:
|
SNP ID:
sf0514705584(Gbrowse)
Chromosome: chr05 Position: 14705584 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 86.52% | 13.48% |
| All Indica | 770 | 77.14% | 22.86% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 357 | 73.11% | 26.89% |
| Indica II | 209 | 76.56% | 23.44% |
| Indica Intermediate | 204 | 84.80% | 15.20% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514705584 | T->C | INTERGENIC | None |