Detailed information of SNP:
|
SNP ID:
sf0514757623(Gbrowse)
Chromosome: chr05 Position: 14757623 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1320 | 92.27% | 7.73% |
| All Indica | 710 | 86.62% | 13.38% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 320 | 83.44% | 16.56% |
| Indica II | 192 | 83.85% | 16.15% |
| Indica Intermediate | 198 | 94.44% | 5.56% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514757623 | C->A | INTERGENIC | None |