Detailed information of SNP:
|
SNP ID:
sf0514763529(Gbrowse)
Chromosome: chr05 Position: 14763529 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 51.63% | 48.37% |
| All Indica | 795 | 77.36% | 22.64% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 80.97% | 19.03% |
| Indica II | 211 | 68.72% | 31.28% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514763529 | T->G | INTERGENIC | None |