Detailed information of SNP:
|
SNP ID:
sf0514786651(Gbrowse)
Chromosome: chr05 Position: 14786651 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1189 | 58.28% | 41.72% |
| All Indica | 594 | 29.12% | 70.88% |
| All Japonica | 491 | 96.74% | 3.26% |
| Aus | 53 | 15.09% | 84.91% |
| Indica I | 266 | 19.17% | 80.83% |
| Indica II | 178 | 48.88% | 51.12% |
| Indica Intermediate | 150 | 23.33% | 76.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 88 | 86.36% | 13.64% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514786651 | G->A | INTERGENIC | None |