Detailed information of SNP:
|
SNP ID:
sf0514800515(Gbrowse)
Chromosome: chr05 Position: 14800515 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1319 | 87.79% | 12.21% |
| All Indica | 789 | 98.73% | 1.27% |
| All Japonica | 412 | 64.32% | 35.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 206 | 99.03% | 0.97% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 272 | 51.10% | 48.90% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 75.86% | 24.14% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514800515 | C->T | INTERGENIC | None |