Detailed information of SNP:
|
SNP ID:
sf0514804998(Gbrowse)
Chromosome: chr05 Position: 14804998 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 51.87% | 48.13% |
| All Indica | 796 | 79.77% | 20.23% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 86.36% | 13.64% |
| Indica II | 212 | 63.21% | 36.79% |
| Indica Intermediate | 210 | 84.76% | 15.24% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514804998 | G->A | LOC_Os05g25570(LOC_Os05g25570.1) | Non-Synonymous SNP |