Detailed information of SNP:



SNP ID: sf0514863786(Gbrowse)

Chromosome: chr05

Position: 14863786
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1406 95.87% 4.13%
All Indica786 93.00% 7.00%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II203 76.85% 23.15%
Indica Intermediate208 96.15% 3.85%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0514863786 C->T INTERGENIC None