Detailed information of SNP:
|
SNP ID:
sf0514876544(Gbrowse)
Chromosome: chr05 Position: 14876544 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.82% | 41.18% |
| All Indica | 798 | 89.10% | 10.90% |
| All Japonica | 497 | 13.68% | 86.32% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514876544 | A->G | INTERGENIC | None |