Detailed information of SNP:
|
SNP ID:
sf0514876717(Gbrowse)
Chromosome: chr05 Position: 14876717 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.51% | 39.49% |
| All Indica | 798 | 87.84% | 12.16% |
| All Japonica | 497 | 13.48% | 86.52% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514876717 | A->G | INTERGENIC | None |