Detailed information of SNP:
|
SNP ID:
sf0514892148(Gbrowse)
Chromosome: chr05 Position: 14892148 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 58.17% | 41.83% |
| All Indica | 795 | 83.40% | 16.60% |
| All Japonica | 497 | 14.08% | 85.92% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 94.39% | 5.61% |
| Indica II | 210 | 60.00% | 40.00% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514892148 | T->C | LOC_Os05g25700(LOC_Os05g25700.1) | INTRON |