Detailed information of SNP:
|
SNP ID:
sf0514906249(Gbrowse)
Chromosome: chr05 Position: 14906249 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 93.19% | 6.81% |
| All Indica | 766 | 90.60% | 9.40% |
| All Japonica | 493 | 95.74% | 4.26% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 352 | 85.23% | 14.77% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 204 | 92.16% | 7.84% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 91 | 83.52% | 16.48% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514906249 | T->C | LOC_Os05g25720(LOC_Os05g25720.1) | Synonymous |