Detailed information of SNP:
|
SNP ID:
sf0514906481(Gbrowse)
Chromosome: chr05 Position: 14906481 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 96.43% | 3.57% |
| All Indica | 786 | 96.06% | 3.94% |
| All Japonica | 493 | 96.55% | 3.45% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 368 | 94.84% | 5.16% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 205 | 95.61% | 4.39% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 82.42% | 17.58% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0514906481 | A->G | INTERGENIC | None |