Detailed information of SNP:
|
SNP ID:
sf0515030248(Gbrowse)
Chromosome: chr05 Position: 15030248 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.74% | 41.26% |
| All Indica | 798 | 39.35% | 60.65% |
| All Japonica | 497 | 85.51% | 14.49% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 22.13% | 77.87% |
| Indica II | 212 | 60.85% | 39.15% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515030248 | A->G | INTERGENIC | None |