Detailed information of SNP:
|
SNP ID:
sf0515043332(Gbrowse)
Chromosome: chr05 Position: 15043332 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 97.93% | 2.07% |
| All Indica | 782 | 96.55% | 3.45% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 200 | 89.50% | 10.50% |
| Indica Intermediate | 207 | 97.10% | 2.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0515043332 | G->A | LOC_Os05g26000(LOC_Os05g26000.1) | Non-Synonymous SNP |